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Mineralogy of carbonates; cements

Fibrous aragonite bundles acting as a cement in intertidal shell sand

This is part of the of  How To…series…  on carbonate rocks

The diagrams and images of carbonate crystal habits and cements are descriptive and intended to provide essential background to other posts that detail the different diagenetic environments.

Carbonate diagenesis is like a game of two halves: one part involves mineral dissolution, the other precipitation.  The two commonly go hand-in-hand; it all depends on the changing fortunes of thermodynamic stability and interstitial fluid flow as the game progresses.

Cements precipitate in available pore space: intergranular, intragranular (like the whorls of gastropods, the septa of corals,  or the chambers of foraminifera), larger voids like those developed in reef frameworks, and microporosity such as pore throats between grains. Neomorphism and mineral replacement involve dissolution and precipitation that change existing cement fabrics and sediment frameworks and hence are not confined to pore space.

Carbonate cements are as varied as the diagenetic environments in which they form – the sea floor, meteoric, deep burial and everywhere in between. The crystal shapes of CaCO3, it’s polymorphs and chemical variants range from needle and whisker-like, to blocky spar. The transitions from one crystal form to another, their growth in open pores, and replacement by stable carbonate phases is what makes carbonate petrography so fascinating.

Distinguishing cements from replacement fabrics:

Bathurst (1976) has a good description of the criteria for making this distinction.  Key among these for recognising cements are:

  • More than one generation of precipitated phase, such as micritic rims followed by drusy calcite spar, or isopachous aragonite overlain by spar.
  • Early cements fringe grain boundaries
  • Cements are interstitial, filling available pore spaces (replacement textures commonly cut across grain-pore boundaries).
  • Sparry cements tend to increase in size from the substrate into the pore space.
  • Intercrystalline boundaries are planar.
  • There are no relic textures (of former cement textures or grain boundaries).
  • Fibrous, bladed and prismatic crystals tend to be oriented normal to a substrate, or in the case of radial textures expand into the pore space.

Crystal size and habit

The three important crystallographic habits of calcite are: (1) prismatic (both short and long), (2) rhombohedral, and (3) scalenohedral.

The terminology for crystal size and shape is from Folk, 1965 – size ranges for the three most important shapes –  needle,  bladed and equant, are shown on the diagram. The term acicular is regarded by some as synonymous with fibrous (needle like), but Flügel (2010) has separated it out as needle-like prisms less than 10 microns wide, so it is included here.

Common calcite and aragonite cement geometry and crystal habits

SEM image of bladed high-Mg calcite from a sabkha

Cement geometry

Isopachous cements consist of fibrous aragonite, high-Mg calcite or fine scalenohedral calcite spar that rim grains or line pores; the cement fringe is of equal thickness throughout (an isopach is a map of thickness). Isopachous cements indicate saturated fluid environments.

Isopachous calcite cement lining a bioclast, overlain by drusy spar

In contrast, pendant (stalactitic or dripstone) cements accumulate on the low point of grains during gravity drainage of interstitial fluid; meniscus cements form at grain contacts where water is retained by surface tension forces. Pendant and meniscus cements indicate vadose environments where sediment wetting was less continuous; common examples are supratidal zones and meteoric settings that have fluctuating watertables.

Common cement in limestones

Two kinds of calcite cement filling the interior of this Jurassic mollusc: isopachous scalenohedral calcite blades grew from the shell margin (black arrow). Note that this cement is zoned (yellow arrow) where different crystal growth stages are subtly outlined by pale brown inclusions. The bulk of the shell cement fill is coarse drusy calcite (d). The original shell may have been aragonitic because there is significant recrystallization and neomorphism (note the irregular crystal boundaries). The red arrow indicates relict laminae in the original shell - most of the original shell structure has been obliterated by recrystallization. Left: Plain polarized light; Right: Crossed polars.
Two kinds of calcite cement filling the interior of this Jurassic mollusc: isopachous scalenohedral calcite blades grew from the shell margin (black arrow). Note that this cement is zoned (yellow arrow) where different crystal growth stages are subtly outlined by pale brown inclusions. The bulk of the shell cement fill is coarse drusy calcite (d). The original shell may have been aragonitic because there is significant recrystallization and neomorphism (note the irregular crystal boundaries). The red arrow indicates relict laminae in the original shell – most of the original shell structure has been obliterated by recrystallization. Left: Plain polarized light; Right: Crossed polars.

Cement fibers and needles, commonly aragonite, and high- and low-Mg calcite can form several different geometries ranging from isopachous rims and radial clusters, to large void-filling fan-shaped botryoids. They are common in supratidal through shallow subtidal settings, as intergranular, skeletal intragranular, and fenestrae. Fenestrae are large pores and cavities formed by various mechanisms including dissolution, gas bubbles, crystal expansion. Fenestrae are common in some cryptalgal laminates and mud mounds containing Stromatactis (spar-filled cavities, common in Paleozoic mud mounds,where the original cement was probably fibrous or radiaxial fibrous – the origin of which is still disputed).

Acicular aragonite cements filling gastropod chambers

Radial aragonite clusters cementing scleractinian coral fragments (top and bottom left) and hornblende crystals (far right), in modern New Caledonia beachrock. PPL
Radial aragonite clusters cementing scleractinian coral fragments (top and bottom left) and hornblende crystals (far right), in modern New Caledonia beachrock. PPL
A large aragonite fan, part of a botryoidal cluster where fans range from 1.5 to 5 mm wide. The right side of the fan is in extinction - as the microscope stage is rotated the extinction pattern will sweep across the entire crystal fan.
A large aragonite fan, part of a botryoidal cluster where fans range from 1.5 to 5 mm wide. The right side of the fan is in extinction – as the microscope stage is rotated the extinction pattern will sweep across the entire crystal fan.

Drusy cements consist of calcite rhomb mosaics that line and fill pores and intraskeletal chambers. The size of calcite rhombs commonly increases towards the center of void spaces. They are common in meteoric and burial environments where they may overlie earlier fibrous and bladed cements. Care must be taken to distinguish these cements from neomorphic textures. The terms granular and blocky are sometimes used to distinguish different crystal sizes in calcite spar, but from a practical point of view are like drusy spar. However, granular and blocky fabrics are also known from neomorphic fabrics, so again, care must be exercised in making this distinction (Neomorphic fabrics are presented in a separate article).

Micrite

R.L. Folk in 1959 decided that the category of microcrystalline carbonate mud would be better served by a grammatical contraction to – micrite. The upper size limit for micrite crystals is 4µm, difficult to see with a standard optical microscope (an SEM is preferable).   Micrite refers to several things:

  • a primary microcrystalline aragonite or high-Mg calcite lime mud precipitate (biologically induced or mediated);
  • a cement, commonly at grain contacts, and
  • the product of substrate alteration by boring algae, fungi, and larger critters like boring Clionid sponges – a process call micritization. Substrates in this case usually refer to skeletal material, ooids and peloids. Micrite cements occur on grain substrates. In contrast, micritization alters those grain substrates, creating opaque, dark brown micrite rims and masses, that ultimately can obliterate primary grain fabrics. Micrite is highly reactive during meteoric and burial diagenesis for two reasons – the original metastable mineralogy, and because of the very high surface area afforded by the micron-sized particles. Therefore, aggrading neomorphism is common.

Micrite rimming skeletal moulds in a bioclastic limestone

Optical geometry

Crystals that have grown on, and are in optical continuity with a substrate are referred to as syntaxial overgrowths or cements; i.e. they share the same optic axis (the term epitaxial is also used in this sense by some, although the International Mineralogical Association insists that in epitaxy the overgrowing phase is mineralogically different to the substrate). Optical continuity is determined under crossed nicols, where the overgrowth and substrate move in and out of extinction together. The classic example of syntaxial overgrowths is calcite cement precipitation on single crystal echinoderm plates.

Poikilotopic calcite cements typically consist of large optically continuous crystals that envelop several framework grains.

Diagram of syntaxial and epitaxial cement overgrowths

An Oligocene bioclastic, glauconitic limestone containing abundant abraded and broken echinoderm plates (e), most of which are encased in syntaxial calcite cement (s). Also present are numerous benthic forams, bryozoa fragments (b - some with glauconite filling), barnacle fragments with large pores filled by calcite cement (bc), and the occasional faecal pellet replaced by glauconite. Left: plain polarized light; Right: crossed polars. The syntaxial overgrowths extinguish at different stages for each echinoderm fragment.
An Oligocene bioclastic, glauconitic limestone containing abundant abraded and broken echinoderm plates (e), most of which are encased in syntaxial calcite cement (s). Also present are numerous benthic forams, bryozoa fragments (b – some with glauconite filling), barnacle fragments with large pores filled by calcite cement (bc), and the occasional faecal pellet replaced by glauconite. Left: plain polarized light; Right: crossed polars. The syntaxial overgrowths extinguish at different stages for each echinoderm fragment.

Radiaxial fibrous calcite

Radiaxial fibrous calcite and its companion fascicular optic calcite are common cavity-filling cements in ancient limestones. Both consist of radially fibrous calcite clusters but differ in their crystallographic orientation. Cleavage and twin planes in radiaxial crystals are concave toward the pore interior, in concert with optic axes that converge toward pore spaces (i.e. opposite the divergence in the actual crystals). Optic axes diverge in fascicular optic clusters (in concert with diverging crystals). Radiaxial cements commonly contain inclusions that mimic earlier cement growth. This property was one of the main criteria that led Kendall and Tucker (1973) and Bathurst (1976) to argue that radiaxial fibrous calcite was a replacement of fibrous aragonite or high-Mg calcite. Now, according to James and Jones (2015), the consensus is that both cements can form by precipitation of low-Mg and high-Mg calcite and that crystal growth is asymmetric. High-Mg calcite types will be replaced by low-Mg calcite during burial.

Radiaxial fibrous dolomite with relict crystal terminations; summarised in a sketch on the right

Thin section images generously contributed by Stephen Lokier, Cam Nelson and Vincent Caron are indicate on each figure.

Links to other posts in this series:

Mineralogy of carbonates; skeletal grains

Mineralogy of carbonates; non-skeletal grains

Mineralogy of carbonates; lime mud

Mineralogy of carbonates; classification

Mineralogy of carbonates; carbonate factories

Mineralogy of carbonates; basic geochemistry

Mineralogy of carbonates; diagenetic settings

Mineralogy of carbonates; sea floor diagenesis

Mineralogy of carbonates; Beachrock

Mineralogy of carbonates; deep sea diagenesis

Mineralogy of carbonates; meteoric hydrogeology

Mineralogy of carbonates; Burial diagenesis

Mineralogy of carbonates; Neomorphism

Mineralogy of carbonates; Pressure solution

Mineralogy of carbonates; Sabkhas

References and useful texts:

R.L.Folk. 1959. Practical petrographic classification of limestones. AAPG Bulletin, v.43, p.1-38.

R.L. Folk, 1965. Some aspects of recrystallization in ancient limestones. In L.C. Pray & R.C. Murray (eds.), Dolomitization and Limestone Diagenesis. SEPM Special Publication 13, p. 14-48.

E. Flügel, 2010. Microfacies of Carbonate Rocks: Analysis, Interpretation and Application. Springer.

Robin G.C. Bathurst, 1976. Carbonate Sediments and their Diagenesis. Elsevier, Developments in Sedimentology, 12. 658pp. An example of the longevity and utility of one of the best on this topic. Now also as an ebook. 

Noel James and Brian Jones. 2015. The origin of carbonate sedimentary rocks. American Geophysical Union, Wiley works, 464p.

A.C. Kendall and M. Tucker, 1973. Radiaxial fibrous calcite: A replacement after acicular carbonate. Sedimentology, v. 20, 20, p. 365-389.

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