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Carbonates in thin section: Molluscan bioclasts

Molluscan bioclastic beach deposits

Molluscan bioclasts are important components of tropical, and cool-temperate water limestones

Bioclasts are probably the most important components of Phanerozoic limestone frameworks (grainstones, rudstones, packstones, floatstones). They include all manner of invertebrates that produce preservable shells and skeletons, algae that secrete calcium carbonate structures (particularly red algae), and sponges that maintain their rigidity by growing an interlocking scaffolding of calcite or silica. Some are microscopic (e.g., foraminifera, radiolaria, sponge spicules), others are macroscopic.  They may be preserved intact or as broken, abraded fragments. The most common macroscopic invertebrate representatives include molluscs, corals, echinoids, cirripedes (e.g., barnacles), bryozoans, and calcareous algae.

Shell structure

By far the largest group of shelly invertebrates is the molluscs, represented by bivalves, gastropods, ammonoids and nautiloids, scaphopods, and amphineura (e.g., chitons). All secrete shells that are layered in calcite or aragonite; each layer is monomineralic but the mineralogy can vary among layers. Many species also grow a chitinous outer layer, the periostracum, but this has low preservation potential. Bivalves commonly have 2 to 4 layers, gastropods up to 6 layers. Each layer consists of microscopic crystals oriented normal, parallel, or oblique to the shell surface. The most common crystal fabrics are:

  • Prismatic, where high- or low-magnesium calcite or aragonite prisms are oriented normal to the shell surface. This is commonly the outer layer of a shell.
Prismatic aragonite forms the primary layer in this small gastropod. A very thin layer on the inside surface (arrow) could be either foliated or crossed lamellar aragonite. The shell whorl is filled by fibrous aragonite cement. Plain polarized light. Recent beachrock, Hawaii.
Prismatic aragonite forms the primary layer in this small gastropod. A very thin layer on the inside surface (arrow) could be either foliated or crossed lamellar aragonite. The shell whorl is filled by fibrous aragonite cement. Plain polarized light. Recent beachrock, Hawaii.
  • Foliated, where micron-sized calcite crystal plates create a fabric that approximately parallels the shell surface.
Part of a bivalve showing a thick layer of foliated calcite – basically a stack of calcite or aragonite plates. Plain polarized light.
Part of a bivalve showing a thick layer of foliated calcite – basically a stack of calcite or aragonite plates. Plain polarized light.
  • Crossed lamellar structure where aragonite crystallites are organized in sheets. The crystallites in one sheet are oriented at relatively high angles to adjacent sheets. The overall effect can sometimes resemble a zig-zag pattern.
This rounded fragment in recent beachrock, could be either bivalve or gastropod. It is a good example of crossed lamellar structure (aragonite); the two sets of lamels are almost at right angles in this view. The main cement along the fragment margin is fibrous aragonite. Crossed nicols. New Caledonia.
This rounded fragment in recent beachrock, could be either bivalve or gastropod. It is a good example of crossed lamellar structure (aragonite); the two sets of lamels are almost at right angles in this view. The main cement along the fragment margin is fibrous aragonite. Crossed nicols. New Caledonia.
  • Nacreous patterns of micron-sized aragonite plates arranged parallel to the surface – where this layer occurs on the inside of a shell, it is easily recognized by the lustrous, rainbow-like colours.

Most bivalves have two, three or four layers composed of calcite or aragonite, but there is much variation in structure depending on the species. For example, some species of the common mussel Mytilus contain a single, thick nacreous layer, whereas oysters (e.g., Ostrea) tend to consist of foliated calcite and a much thinner nacreous layer. Other species consist of combinations of layer types. Gastropods have up to 6 layers that in some species are all aragonite, and in others contain a thin layer of prismatic calcite. Scaphopods and cephalopods are composed entirely of aragonite.

Shells that contain aragonite are prone to recrystallization and replacement by sparry, low magnesium calcite. Mineral replacement usually destroys original crystal textures and may even obscure the distinction of individual layers, although traces of the former textures may persist. Examples of such textural changes are shown below.

Identification

Bioclasts are commonly fragmented. Fragment size is highly variable, depending on the original size of the critter, the degree of comminution resulting from bioerosion, and abrasion during transport and deposition, and to some extent diagenesis. In general, the larger the fragment, the easier the interpretation. However, there will be many fragments where even the phylum may be difficult to determine. Such problems are exacerbated by the (mostly) random orientation of a thin section slice through the bioclasts.  The diagrams below show some of the characteristic morphological elements of mollusc shells that may help in this regard.

In thin section, the distinction among mollusc classes and species often relies on a few basic morphological elements that may be preserved in larger shell fragments.
In thin section, the distinction among mollusc classes and species often relies on a few basic morphological elements that may be preserved in larger shell fragments.

Bivalves

Non-chambered. A change in shell curvature from ventral to dorsal margins is most pronounced at the umbo, although this may not be apparent in some species such as oysters. The thickened hinge area between two valves is located just below the umbo; if you are really lucky there may be evidence of dentition (teeth and sockets). However, small fragments can be difficult to distinguish from gastropod or even brachiopod fragments.

A small thin-shelled bivalve with hinged valves (hinge top left); valves thin towards the ventral margin. The outer layer (yellow-brown) has either crossed lamellar or foliated structure – this layer thins towards the umbo and is underlain by a (?) foliated layer. The inner surface is lined with a thin, isopachous aragonite rind. The sediment fill is predominantly pellets and sand. Plain polarized light. Holocene hardground, Abu Dhabi. Image courtesy of Stephen Lockier.
A small thin-shelled bivalve with hinged valves (hinge top left); valves thin towards the ventral margin. The outer layer (yellow-brown) has either crossed lamellar or foliated structure – this layer thins towards the umbo and is underlain by a (?) foliated layer. The inner surface is lined with a thin, isopachous aragonite rind. The sediment fill is predominantly pellets and sand. Plain polarized light. Holocene hardground, Abu Dhabi. Image courtesy of Stephen Lockier.
The ventral margin (i.e., opposite the hinged margin) of a bivalve in which the original carbonate has been recrystallized to calcite; note the neomorphic textures (n). The inner layer of (?) foliated carbonate is preserved in relicts outlined by microscopic inclusions of calcite, clay-sized sediment, and possibly altered organic matter. The shell paragenesis began with an initial rind of siderite cement (dark brown) followed by isopachous, scalenohedral calcite (arrow), and finally very coarse sparry calcite. Plain polarized light. Jurassic, northern British Columbia.
The ventral margin (i.e., opposite the hinged margin) of a bivalve in which the original carbonate has been recrystallized to calcite; note the neomorphic textures (n). The inner layer of (?) foliated carbonate is preserved in relicts outlined by microscopic inclusions of calcite, clay-sized sediment, and possibly altered organic matter. The shell paragenesis began with an initial rind of siderite cement (dark brown) followed by isopachous, scalenohedral calcite (arrow), and finally very coarse sparry calcite. Plain polarized light. Jurassic, northern British Columbia.
A Pliocene bivalve sectioned to show the hinge line (red arrow) and umbo. The original aragonite has been replaced by coarse neomorphic calcite spar, but remnants of the original foliated or crossed lamellar layers persist (black arrow). Plain polarized light. Image courtesy of Vincent Caron.
A Pliocene bivalve sectioned to show the hinge line (red arrow) and umbo. The original aragonite has been replaced by coarse neomorphic calcite spar, but remnants of the original foliated or crossed lamellar layers persist (black arrow). Plain polarized light. Image courtesy of Vincent Caron.
A partly recrystallized fragment of either a bivalve or gastropod showing relict foliated layering. This fragment is thoroughly bored, probably by sponges. The borings are filled by micritic calcite (dark brown). Top right is a bryozoa fragment. Plain polarized light.
A partly recrystallized fragment of either a bivalve or gastropod showing relict foliated layering. This fragment is thoroughly bored, probably by sponges. The borings are filled by micritic calcite (dark brown). Top right is a bryozoa fragment. Plain polarized light.

Gastropods

Whorls are arranged in corkscrew fashion around a central, solid column (the columella); longitudinal and oblique sections will show this arrangement. Transverse sections will show the columella. The gastropod spire, whether short or long, will be tapered. Whorls will be filled with sediment and/or cements.

A small gastropod spire snuggled up against a much larger fragment of (probable) bivalve. The whorl cavities are lined initially by isopachous siderite (brown), followed by drusy calcite spar. The outer layer of the bivalve is mostly neomorphic calcite spar (n), but relict fabrics suggest an original crossed lamellar structure (arrow). The outer margin of the shell has numerous small borings (b). Plain polarized light. Jurassic, northern British Columbia.
A small gastropod spire snuggled up against a much larger fragment of (probable) bivalve. The whorl cavities are lined initially by isopachous siderite (brown), followed by drusy calcite spar. The outer layer of the bivalve is mostly neomorphic calcite spar (n), but relict fabrics suggest an original crossed lamellar structure (arrow). The outer margin of the shell has numerous small borings (b). Plain polarized light. Jurassic, northern British Columbia.
A small, turreted gastropod. The main layer is prismatic aragonite. There is a thin foliated layer between each whorl. The whorl cavities are also lined with fibrous aragonite cement. In the bioclastic mix are echinoderm spines (e), barnacle fragments (b), and a couple of bivalve or gastropod fragments (f) with well-defined foliated structures. Plain polarized light. Recent beachrock, Hawaii.
A small, turreted gastropod. The main layer is prismatic aragonite. There is a thin foliated layer between each whorl. The whorl cavities are also lined with fibrous aragonite cement. In the bioclastic mix are echinoderm spines (e), barnacle fragments (b), and a couple of bivalve or gastropod fragments (f) with well-defined foliated structures. Plain polarized light. Recent beachrock, Hawaii.
A transverse section of a small gastropod (details of layering shown in image above). The central columella is characteristically thickened. The whorl cavity is filled with bundled isopachous fibrous aragonite cement. Its neighbours include a large benthic foram and an echinoderm fragment. Plain polarized light. Recent beachrock, Hawaii.
A transverse section of a small gastropod (details of layering shown in image above). The central columella is characteristically thickened. The whorl cavity is filled with bundled isopachous fibrous aragonite cement. Its neighbours include a large benthic foram and an echinoderm fragment. Plain polarized light. Recent beachrock, Hawaii.
An oblique section through a gastropod, possibly a (pelagic) pteropod. The primary layer is cross lamellar structure. In the bioclastic mix are pellets plus small fragments of bryozoa and barnacles. Plain polarized light. Recent sediment, Three Kings Islands, northernmost New Zealand. Image courtesy of Cam Nelson.
An oblique section through a gastropod, possibly a (pelagic) pteropod. The primary layer is cross lamellar structure. In the bioclastic mix are pellets plus small fragments of bryozoa and barnacles. Plain polarized light. Recent sediment, Three Kings Islands, northernmost New Zealand. Image courtesy of Cam Nelson.
Fragment of a large gastropod showing recrystallization of the original aragonite and calcite neomorphism to coarse spar. The top margin shows relict prismatic structure. The borings have been filled with host sediment. Plain polarized light. Provenance unknown.
Fragment of a large gastropod showing recrystallization of the original aragonite and calcite neomorphism to coarse spar. The top margin shows relict prismatic structure. The borings have been filled with host sediment. Plain polarized light. Provenance unknown.

Scaphopods

Also known as tusk shells, are tapered longitudinally and hollow down the centre where the animal resides. Transverse sections show a circular shell outline; the shell is layered as in other molluscs, but calcite replacement of the aragonite may obscure the original layer structures. The central part of the shell is hollow and will fill with sediment and or cements. In life, the shells are open at both ends.

Hand specimen view of a Jurassic seafloor littered with scaphopod shells plus a few small brachiopods and bivalves (Northern British Columbia). The shells show a crude current alignment. Cartoon on the right depicts a scaphopod in feeding position beneath the sediment-water interface. Apparently, they like to eat foraminifera.
Hand specimen view of a Jurassic seafloor littered with scaphopod shells plus a few small brachiopods and bivalves (Northern British Columbia). The shells show a crude current alignment. Cartoon on the right depicts a scaphopod in feeding position beneath the sediment-water interface. Apparently, they like to eat foraminifera.
An oblique section through a Jurassic scaphopod. Remnants of a crossed lamellar layer can be seen along the upper wall of the shell (arrow). The cavity has an initial thin rind of siderite (brown) cement (s), the remnants of an isopachous (i) cement (now calcite), and a later fill of neomorphosed calcite spar. Left, plain polarized light; Right, crossed polars. Northern British Columbia.
An oblique section through a Jurassic scaphopod. Remnants of a crossed lamellar layer can be seen along the upper wall of the shell (arrow). The cavity has an initial thin rind of siderite (brown) cement (s), the remnants of an isopachous (i) cement (now calcite), and a later fill of neomorphosed calcite spar. Left, plain polarized light; Right, crossed polars. Northern British Columbia.
A transverse section of a scaphopod, replaced by neomorphosed calcite spar. The main layer shows remnants of crossed lamellar structure (arrow). The cavity is lined by siderite (s), followed by a rim of small scalenohedral calcite crystals, with the remaining void filled by calcite spar. The cement fill (siderite overlain by calcite spar) also presents a geopetal structure (g), where stratigraphic top was to the top right (yellow arrow). The fragment top right could be either mollusc or brachiopod – recrystallization of the calcite has obliterated original defining textures. Left, plain polarized light; Right, crossed polars. Jurassic, northern British Columbia.
A transverse section of a scaphopod, replaced by neomorphosed calcite spar. The main layer shows remnants of crossed lamellar structure (arrow). The cavity has an isopachous veneer of acicular calcite (s), followed by a rim of small scalenohedral calcite crystals, with the remaining void filled by calcite spar cement. Part of the scaphopod fill presents a geopetal structure (g), where stratigraphic top was to the top right (yellow arrow); it consists of dark brown mud, quartz silt, and siderite. The fragment top right could be either mollusc or brachiopod – recrystallization of the calcite in this fragment has obliterated original defining textures. Left, plain polarized light; Right, crossed polars. Jurassic, northern British Columbia.

Distinguishing molluscs from other phyla

Brachiopods: Bivalved, shells always unequal but bilaterally symmetrical. Shells consist of calcite layers. Small fragments may be difficult to distinguish from molluscs, unless they contain punctae normal to the shell surface (punctae are tube-like perforations through the shell). Brachiopod shells are connected at a hinge but lack the dentition that is characteristic of bivalves.

Echinoderms: Echinoderm plates and spines consist of a single calcite crystal. Calcite cements are commonly syntaxial; this can be verified under crossed nicols where the plate (or spine) plus cement will move into extinction together. Plates and spines also contain micron-sized pores that will ultimately fill with syntaxial calcite cement, or minerals such as glauconite.

Barnacles: The interlaminate and plicate (fold) structures typical of barnacle plates (mostly low magnesium calcite) are diagnostic thin section features, even in small fragments. Individual plates may contain a mix of aragonite and calcite, unlike mollusc layers that are always monomineralic.

Foraminifera: Small gastropods sometimes resemble planispiral benthic forams. However, the chambers in forams are discrete and separate from their nearest neighbours; the body whorls in gastropods are continuous and arranged in corkscrew fashion around a central column.

Acknowledgement

Many thanks to Kirsty Vincent, Earth Sciences, Waikato University for access to the petrographic microscope.

Other posts in this series

Brachiopod morphology for sedimentologists

Bivalve shell morphology for sedimentologists

Gastropod shell morphology for sedimentologists

Cephalopod morphology for sedimentologists

Optical mineralogy: Some terminology

Carbonates in thin section: Echinoderms and barnacles

Carbonates in thin section: Bryozoa

Carbonates in thin section: Forams and sponges

Neomorphic textures in thin section

Sandstones in thin section

Greywackes in thin section

Mineralogy of carbonates; skeletal grains

Bivalve morphology for sedimentologists

Mineralogy of carbonates; non-skeletal grains

Mineralogy of carbonates; lime mud

Mineralogy of carbonates; classification

Mineralogy of carbonates; carbonate factories

Mineralogy of carbonates; basic geochemistry

Mineralogy of carbonates; cements

Mineralogy of carbonates; sea floor diagenesis

Mineralogy of carbonates; Beachrock

Mineralogy of carbonates; deep sea diagenesis

Mineralogy of carbonates; meteoric hydrogeology

Mineralogy of carbonates; Karst

Mineralogy of carbonates; Burial diagenesis

Mineralogy of carbonates; Neomorphism

Mineralogy of carbonates; Pressure solution

Mineralogy of carbonates: Stromatolite reefs

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